PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G123600.1

Common Name

B456_002G123600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 470aa MW: 51205.1 Da PI: 9.9242

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G123600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	221	242	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Gorai.002G123600.1 221 CSQCGEVFPKIESLELHQAVrH 242 99****************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.517	219	247	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	219	242	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.82E-24	244	462	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.7E-15	246	462	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MQRPHSHPPQ FSSLLPLSDP TPFAHKSYKK SERAESTLVL LFIMALLTFL PEAAAEPMKQ 60 PPKRRRKQVK KQKQPTTSSW DQIKNLLTCK QMEGSKVHDP SKNNNPAPPH HHQHGYSKLG 120 SSCSSICSFR DVVHGNTRVV HRADNSPESS TIGQETALLR RKAVNGSSSR SLSGSTRSNN 180 STTTSSSSRA IQFRKLSGCY ECHTIVDPSR YPSSRTSICG CSQCGEVFPK IESLELHQAV 240 RHAVSELGPE DSGRNIVEII FKSSWLKKDN PICKIERILK VHNNQRTIQR FEDCRDAVKT 300 RALNSTRKNP RCAADGNELL RFHCTTLSCS LGARGSSSLC GSIPGCGVCT IIRQGFQNKG 360 GGTAPAAEFK GVVTTASSGR AHDSIKRTDG RRAMLVCRVI AGRVKRVADE APPLEDENSS 420 GVSSSAGSYD SVAAYAGVYS NLEELVVFNA RAILPCFVVI YKALESGLI*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MQRPHSHPPQ FSSLLPLSDP TPFAHKSYKK SERAESTLVL LFIMALLTFL PEAAAEPMKQ  60
PPKRRRKQVK KQKQPTTSSW DQIKNLLTCK QMEGSKVHDP SKNNNPAPPH HHQHGYSKLG  120
SSCSSICSFR DVVHGNTRVV HRADNSPESS TIGQETALLR RKAVNGSSSR SLSGSTRSNN  180
STTTSSSSRA IQFRKLSGCY ECHTIVDPSR YPSSRTSICG CSQCGEVFPK IESLELHQAV  240
RHAVSELGPE DSGRNIVEII FKSSWLKKDN PICKIERILK VHNNQRTIQR FEDCRDAVKT  300
RALNSTRKNP RCAADGNELL RFHCTTLSCS LGARGSSSLC GSIPGCGVCT IIRQGFQNKG  360
GGTAPAAEFK GVVTTASSGR AHDSIKRTDG RRAMLVCRVI AGRVKRVADE APPLEDENSS  420
GVSSSAGSYD SVAAYAGVYS NLEELVVFNA RAILPCFVVI YKALESGLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394995	1e-137	GQ394995.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2018 SSR marker DPL0425 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465784.1	0.0	PREDICTED: uncharacterized protein LOC105784443
TrEMBL	A0A0D2MA04	0.0	A0A0D2MA04_G
STRING	POPTR_0005s25950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-165	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.002G123600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]