PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G123600.1
Common NameB456_002G123600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 470aa    MW: 51205.1 Da    PI: 9.9242
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G123600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063221242323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         C+ Cg++F+  ++L+ H+ + H
  Gorai.002G123600.1 221 CSQCGEVFPKIESLELHQAVrH 242
                         99****************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.517219247IPR007087Zinc finger, C2H2
PROSITE patternPS000280219242IPR007087Zinc finger, C2H2
SuperFamilySSF563998.82E-24244462No hitNo description
Gene3DG3DSA:3.90.228.104.7E-15246462IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MQRPHSHPPQ FSSLLPLSDP TPFAHKSYKK SERAESTLVL LFIMALLTFL PEAAAEPMKQ  60
PPKRRRKQVK KQKQPTTSSW DQIKNLLTCK QMEGSKVHDP SKNNNPAPPH HHQHGYSKLG  120
SSCSSICSFR DVVHGNTRVV HRADNSPESS TIGQETALLR RKAVNGSSSR SLSGSTRSNN  180
STTTSSSSRA IQFRKLSGCY ECHTIVDPSR YPSSRTSICG CSQCGEVFPK IESLELHQAV  240
RHAVSELGPE DSGRNIVEII FKSSWLKKDN PICKIERILK VHNNQRTIQR FEDCRDAVKT  300
RALNSTRKNP RCAADGNELL RFHCTTLSCS LGARGSSSLC GSIPGCGVCT IIRQGFQNKG  360
GGTAPAAEFK GVVTTASSGR AHDSIKRTDG RRAMLVCRVI AGRVKRVADE APPLEDENSS  420
GVSSSAGSYD SVAAYAGVYS NLEELVVFNA RAILPCFVVI YKALESGLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3949951e-137GQ394995.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2018 SSR marker DPL0425 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465784.10.0PREDICTED: uncharacterized protein LOC105784443
TrEMBLA0A0D2MA040.0A0A0D2MA04_G
STRINGPOPTR_0005s25950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-165C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]